GitHub

Processing Library and Analysis Toolkit for Medical Imaging in Python

PlatiPy is a library of amazing tools for image processing and analysis - designed specifically for medical imaging! Check out the PlatiPy documentation for more info. This project was motivated by ...
Frontiers

SlicerHeart: An open-source computing platform for cardiac image analysis and modeling

Cardiovascular disease is a significant cause of morbidity and mortality in the developed world. 3D imaging of the heart's structure is critical to the understanding and treatment of cardiovascular ...
Frontiers

Perceptual multivariate visualisation of volumetric Lagrangian fluid-flow processes

Lagrangian flow data in oceanography are highly complex, encompassing not only the underpinning Eulerian, advective, vectorial flow fields and the three-dimensional position coordinates of tracer ...
Europe PMC

Fully Automated 3-D Ultrasound Segmentation of the Placenta, Amniotic Fluid, and Fetus for Early Pregnancy Assessment.

Volumetric placental measurement using 3-D ultrasound has proven clinical utility in predicting adverse pregnancy outcomes. However, this metric cannot currently be employed as part of a screening ...
eLife

Temporal integration of auxin information for the regulation of patterning

Laboratoire Reproduction et Développement des Plantes, Univ Lyon, ENS de Lyon, UCB Lyon 1, CNRS, INRAE, Inria, France; Department of Stem Cell Biology, Centre for Organismal Studies, Heidelberg ...
GitHub

VTKBlender: VTK and Blender

VTK is a great visualization library and Blender is a fantastic rendering and animation suite. This software uses the python interpreter inside Blender to give access to VTK routines. It should be ...
Nature

Dense EM-based reconstruction of the interglomerular projectome in the zebrafish olfactory bulb

The dense reconstruction of neuronal circuits from volumetric electron microscopy (EM) data has the potential to uncover fundamental structure–function relationships in the brain. To address ...