sourmash is a tool for biological sequence analysis and comparisons. sourmash compare and sourmash plot produce basic distance matrix plots that are useful for comparing and visualizing the ...

These scripts can be used to cluster a parsed set of monomeric protein chains via a global conformational change metric based on CA distances. Once the polypeptide chains destined for clustering have ...

Rocks close to the surface fracture, whereas rocks at depths flow implying the existence of a “brittle-to-ductile” transition (BDT) region. This region is key in several Earth science applications and ...

Creative Commons (CC): This is a Creative Commons license. Attribution (BY): Credit must be given to the creator. Non-Commercial (NC): Only non-commercial uses of the work are permitted. No ...

Haplotype identification, characterization and visualization are important for large-scale analysis and use in population genomics. Many tools have been developed to visualize haplotypes, but it is ...

For living cells to function, proteins must efficiently navigate the densely packed cytosol. Protein diffusion is slowed down by high viscosity and can come to a complete halt because of nonspecific ...

Statistical machine learning methods are increasingly used for neuroimaging data analysis. Their main virtue is their ability to model high-dimensional datasets, e.g., multivariate analysis of ...