Frontiers

N2SIMBA: from Network topology to SIMulation of interactions and BActerial abundance, using microbial consumer resource model

Microorganisms often coexist and establish complex interaction patterns within their environment. Recent advances in efficient and cost-effective 16S rDNA sequencing have greatly improved our ability ...
C&EN

Molecular Modeling and Molecular Dynamics Simulation of a Packed and Intact Bacterial Microcompartment

MSU-DOE Plant Research Laboratory, College of Natural Science, Michigan State University, East Lansing Michigan 48824, United States MSU-DOE Plant Research Laboratory, College of Natural Science, ...
GitHub

iajzenszmi/Markov-Chains-in-Python3

Skip to content Chat history You said: Multiple state Markov chain demonstrated in python ChatGPT said: Here is a complete Python demonstration of a multiple-state ...
GitHub

RayCloudSim: A Simulation Platform Written in Python for Cloud/Fog/Edge Computing

UbiCompSim is designed as a unified simulation platform for ubiquitous computing, built with Python + SimPy + NetworkX. Compared with RayCloudSim, it provides a more modern and extensible architecture ...
Europe PMC

SCANPY: large-scale single-cell gene expression data analysis.

SCANPY is a scalable toolkit for analyzing single-cell gene expression data. It includes methods for preprocessing, visualization, clustering, pseudotime and trajectory inference, differential ...