GKMKernel family — gapped k-mer kernels from gkmSVM / LS-GKM (Ghandi et al. 2014; Lee 2016). C-backed, OpenMP-parallel, with full/estimated/truncated mismatch schemes, 6 post-transforms (RBF, poly, ...
We are living in an era where biology has become synonymous with big data due to the ever-increasing amount of data being generated by technologies such as next-generation sequencing. Bioinformatics ...
Extracellular matrices direct the formation of mineral constituents into self-assembled mineralized tissues. We investigate the protein and mineral constituents to better understand the underlying ...
Creative Commons (CC): This is a Creative Commons license. Attribution (BY): Credit must be given to the creator. While the acquisition of cryo-electron microscopy (cryo-EM) at near-atomic resolution ...
Sequencing and phylogenetic classification have become a common task in human and animal diagnostic laboratories. It is routine to sequence pathogens to identify genetic variations of diagnostic ...
Peptide-binding proteins carry out a variety of biological functions in cells and predicting their binding specificity could significantly improve our understanding of molecular pathways. Deep neural ...
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